Chrom Position Ref Cons Reads1 Reads2 VarFreq Strands1 Strands2 Qual1 Qual2 Pvalue MapQual1 MapQual2 Reads1Plus Reads1Minus Reads2Plus Reads2Minus VarAllele BHF 36 T C 4 25 86.21% 1 1 34 35 1.3609484587042076E-12 1 1 4 0 25 0 C BHF 60 T Y 34 108 76.06% 1 1 36 37 1.691426813342149E-48 1 1 34 0 108 0 C BHF 66 A R 48 156 76.47% 2 1 36 35 4.7600059772388033E-70 1 1 47 1 156 0 G BHF 102 G R 85 218 71.95% 2 2 38 37 2.206610391971535E-94 1 1 74 11 206 12 A BHF 115 T Y 85 226 72.67% 2 2 37 36 2.4037737204181542E-98 1 1 72 13 213 13 C BHF 117 T Y 86 225 72.35% 2 2 37 35 1.1096490314014084E-97 1 1 73 13 212 13 C BHF 160 G R 97 164 62.84% 2 2 36 36 6.687643773069842E-67 1 1 67 30 103 61 A BHF 178 T Y 108 225 67.57% 2 2 35 35 1.9166341261239546E-94 1 1 63 45 78 147 C BHF 304 A R 55 65 54.17% 2 2 37 37 1.456412449574169E-25 1 1 7 48 2 63 G